Adenita
Adenita is a toolkit for the modeling and visualization of DNA Nanostructures.
ARAP Interpolation Path
Generate paths between two protein conformations within a few seconds thanks to ARAP interpolation.
Atoms Selector
Select atoms based on expressions with NSL-like variables, standard mathematical and logical operations.
Brenner interaction model
Perform interactive simulations of carbon nanotubes, graphene and hydrocarbon systems. Build complex geometries thanks to this reactive force field.
Cluster Game
A game where you build optimal assemblies of interacting atoms.
Crystal Creator
Generate crystal models in a few clicks. Describe unit cells, import CIF files, model defects and impurities. Cut crystals.
GROMACS Wizard
Prepare, minimize, equilibrate, and simulate systems using GROMACS.
Gzip Importer
Importer for gzipped (.gz) files of already supported formats (e.g., .pdb.gz).
Hex
Perform protein sampling and docking.
IM-UFF
Simulate molecular systems using this generalized, Interactive-Modeling version of the Universal Force Field capable of with automatic bond creation a...
Interactive Ramachandran Plot
Display Ramachandran diagram of selected residues. Move a residue on the plot and see the effect it has on the protein.
Log Viewer
Want to check logs and output?
This Element redirects C/C++ standard streams and Qt messages.
MMTF Importer
Importer for the macromolecular transmission format (MMTF) files (*.mmtf).
Normal Modes Analysis
Compute the nonlinear normal modes of a molecular system (protein, RNA, DNA) very quickly using the NOLB algorithm developed by Alexandre Hoffmann and...
P-NEB
Use a parallel implementation of the nudged elastic band (NEB) method to find saddle points and minimum-energy paths.
Pepsi-SAXS
Rapidly compute small-angle X-ray scattering profiles.
Protein Aligner
Align multiple sequence (based on the MUSCLE software) and structures.
Protein Path Search
Find protein conformational transition paths within minutes with the newly developed ART-RRT method.
Rotamers editor
Modify an amino acid residue into its rotamer or mutate it into an amino acid residue of a different type.
SDK Element Generator
Want to create a SAMSON Element? Easily generate an empty SAMSON Element from a template and start developing.
SDK Element Packager
Package and validate a SAMSON Element you developed for further publishing on samson-connect.net.
Simple Script
Modify atoms' parameters (position, selection, etc) using a simple scripting language, NSL-like variables, mathematical and logical operations.
SMILES Manager
Import thousands of SMILES codes. Filter them using custom patterns. Modify them and generate their corresponding 2D image. Add them to the SAMSON Doc...
STL File Importer
Import Stereolithography (.stl) binary and ASCII files. Visualize them. Generate carbon atoms based on stl files to create quickly new original atomic...
Symmetry Detection
Detect axes of cyclic, dihedral and cubic symmetries in protein complexes.
Symmetry Mate Editor
Interactively generate symmetry mates of a protein based on the crystallographic information from a pdb file.
TMD Image Analyzer
Construct transition metal dichalcogenide monolayers from experimental images.
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