Pepsi-SAXS

Updated: Apr 05, 2024


Latest versions

3.0.1 for SAMSON 2022 R2

3.0.1 for SAMSON 2022 R2

3.0.1 for SAMSON 2022 R2

2321
68
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Pepsi-SAXS

Updated: Apr 05, 2024


Latest versions

3.0.1 for SAMSON 2022 R2

3.0.1 for SAMSON 2022 R2

3.0.1 for SAMSON 2022 R2

2321
68
Rapidly compute small-angle X-ray scattering profiles.

This extension provides a GUI for the Pepsi-SAXS module that rapidly computes small-angle X-ray scattering profiles.

Pepsi-SAXS (PEPSI stands for Polynomial Expansions of Protein Structures and Interactions) is new implementation of the multipole-based scheme initially proposed by Stuhrmann (Stuhrmann, 1970). Overall, this method is significantly faster with a similar accuracy compared to Crysol, FoXS, and the 3D-Zernike implementation from the SAStbx package.

Pepsi-SAXS is based on the spherical harmonics expansion method and interactively updates the fits if the molecular structure is modified. Multi-threading is currently only supported for Linux & macOS.

Learn more about the method, benchmarks and preformance on the Pepsi-SAXS web-page.

References

Sergei Grudinin, Maria Garkavenko, Andrei Kazennov. Pepsi-SAXS : an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles. Acta Cryst., 2017, D73, pp.449 – 464.

This extension has been originally created by Sergei Grudinin as a part of his research work at NANO-D, Inria.

Pepsi-SAXS is an extension for SAMSON,
the integrative platform for molecular design.

To use Pepsi-SAXS:

1. Create your free account and choose a molecular design plan
2. Download and install SAMSON on your computer
3. Come back to this page to add the extension to your account


When you restart SAMSON, the extension will be automatically installed
and will be usable directly from within SAMSON.