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Protein Aligner

Publisher: Guillaume Pages

Updated: August 28, 2019


Latest versions

Windows: 1.0.0 on SAMSON 0.5.0

Linux: 0.8.0 on SAMSON 0.8.5

Mac: 0.8.0 on SAMSON 0.8.5

Free element

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Protein Aligner

Publisher: Guillaume Pages

Updated: August 28, 2019


Latest versions:

- Windows: 1.0.0 on SAMSON 0.5.0

- Linux: 0.8.0 on SAMSON 0.8.5

- Mac: 0.8.0 on SAMSON 0.8.5

Align multiple sequence (based on the MUSCLE software) and structures.

This SAMSON Element is an editor which aligns multiple sequence (based on the MUSCLE software) and structures.

Documentation

To align protein structures, select the structure you want to move, right-click on it, choose "Align to" then choose the protein on which you want to align. To open the sequence alignment window, click twice on the editor icon app. From this window, you can align sequences, visualize this alignment and residues properties and then align structures based on part of the sequence.

Last tip: you can copy parts of the alignment in this window and get it in FASTA format in a text editor.

See the Aligning sequences with MUSCLE tutorial for more information.